While creating a new CRM Organization using the Deployment Manager Console you might see a message saying that the Create New Organization wizard cannot verify that SQL Server Agent is running and is indicated as a warning message:
It turns out that the Deployment Administrator account needs to be a Local Administrator on the SQL Instance server so that the warning message does not appear.
Deployment Administrator Account from Console
On the SQL Server Instance Box DEV-DB01:
Now if the Create New Organization wizard is run through the Deployment Manager Console the SQL Server Agent warning message should disappear